Revert^2 "PackageParser support for flagging manifest entries"

This reverts commit 1cf56be6db80f41b2779af4718ef04898d0ad6b5.

Reason for revert: the test that fails is bad, needs to be fixed

Change-Id: Ifa225ea5d8a7cf3df1132fb0e3c411ed18c5ea57
13 files changed